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Transcriptome analysis and identification of genes involved in terpenoid biosynthesis of Eurycoma longifolia Jack root | Abstract
Scholars Research Library

Scholars Research Library

Journal of Natural Product and Plant Resources

Abstract

Transcriptome analysis and identification of genes involved in terpenoid biosynthesis of Eurycoma longifolia Jack root

Author(s): Norlia Basherudin*, Nor Hasnida Hassan, Nur Nabilah Alias, Norwati Muhammad, Mohd Faizal Abu Bakar and Mohd Noor Mat Isa

Eurycoma longifolia has been widely used for various traditional medicinal purposes in Malaysia. Among the major compounds produced in E. longifolia is quassinoids. However little is known about the biosynthesis pathway leading to these compounds. As a starting point, genes involved in terpenoids biosynthesis pathway, which is the primary pathway leading to quassinoid were  analysed  using Illumina high-throughput  RNA-sequencing technology.   The transcriptome profiles  were  generated  from  roots  of  the  mature  10-year-old  and  the  young  1-year-old  longifolia. BLAST against the Nr database of 60,753 non-redundant unigenes obtained indicated that only 34,673 (57%) showed homology to known proteins and was highly similar to citrus. Most assignments of gene ontology based on the biological process category were to “metabolic process”. KEGG analysis showed that key enzymes in major secondary metabolite pathways were present in the transcriptome and the highest were assigned to “phenylpropanoid biosynthesis” and “terpenoid backbone biosynthesis”. Differentially expressed gene analysis predicted 154 unigenes were potentially related to quassinoid biosynthesis. They were up-regulated in 10-year-old roots and were either involved in terpenoids backbone biosynthesis,encoded for transcription factors (WRKY and AP2/ERF genes) or encoded for cytochrome P450.


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